Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs6881253 chr5:1795966 G/A 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs6890404 chr5:1799172 A/T 1.42E-7 132 42.27 48.4 18.4 KM Plot
TGCT rs6894566 chr5:1833899 T/C 1.73E-10 131 41.33 51.67 19.5 KM Plot
TGCT rs6900726 chr6:42531650 G/A 4.72E-9 129 19.33 51.67 37.95 KM Plot
TGCT rs6902425 chr6:42563346 T/G 3.69E-9 131 19.33 51.67 37.95 KM Plot
TGCT rs6902495 chr6:156977835 G/A 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs6905058 chr6:156986550 A/C 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs6905797 chr6:42642923 C/G 2.46E-8 134 20.6 52.38 37.53 KM Plot
TGCT rs6908026 chr6:41345896 G/A 1.2E-6 130 45.1 25.77 11.53 KM Plot
TGCT rs6911412 chr6:156974418 C/T 0.000112 134 40.57 56.7 59.27 KM Plot
TGCT rs6915631 chr6:156979666 C/T 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs6916489 chr6:156974859 C/T 0.00012 134 41.97 42.27 59.27 KM Plot
TGCT rs6919504 chr6:156976650 A/G 0.000103 134 39.38 74.4 59.27 KM Plot
TGCT rs6920955 chr6:156977480 A/G 0.000115 133 41.97 58.67 59.27 KM Plot
TGCT rs6920987 chr6:156977520 A/G 0.000115 132 39.38 74.4 59.27 KM Plot